Transcript: ENST00000477647.1 SLC49A4-202

Description

solute carrier family 49 member 4 [Source:HGNC Symbol;Acc:HGNC:16628]

Gene Synonyms

DIRC2, FLJ14784, RCC4

Location

Chromosome 3: 122,795,084-122,879,748 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 1 domain and feature, is associated with 33160 variant alleles and maps to 435 oligo probes.

Gene

This transcript is a product of gene ENSG00000138463.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000261038.6	SLC49A4-201	3322	478aa	ENSP00000261038.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3018	Q96SL1-1	NM_032839.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000477647.1	SLC49A4-202	1822	115aa	ENSP00000418554.1	Nonsense mediated decay		Q05BS2	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 8, Coding exons: 2, Transcript length: 1,822 bps, Translation length: 115 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000477647.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000477647.1 SLC49A4-202

Summary

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Transcript: ENST00000477647.1 SLC49A4-202

Summary

About Us

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