Transcript: ENST00000555551.1 MIP-201

Description

major intrinsic protein of lens fiber [Source:HGNC Symbol;Acc:HGNC:7103]

Gene Synonyms

AQP0, LIM1, MP26

Location

Chromosome 12: 56,452,639-56,469,166 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 7145 variant alleles and maps to 250 oligo probes.

Gene

This transcript is a product of gene ENSG00000135517.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000652304.1	MIP-204	2614	263aa	ENSP00000498622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8919	P30301	NM_012064.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000648442.1	MIP-202	936	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000650166.1	MIP-203	555	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000555551.1	MIP-201	995	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 995 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000555551.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000555551.1 MIP-201

Summary

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Transcript: ENST00000555551.1 MIP-201

Summary

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