Transcript: ENST00000596627.1 IRGC-202

Description

immunity related GTPase cinema [Source:HGNC Symbol;Acc:HGNC:28835]

Gene Synonyms

CINEMA, IIGP5, IRGC1

Location

Chromosome 19: 43,716,110-43,719,272 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 1690 variant alleles and maps to 277 oligo probes.

Gene

This transcript is a product of gene ENSG00000124449.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000244314.6	IRGC-201	1596	463aa	ENSP00000244314.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12629	J7NNX4 Q6NXR0	NM_019612.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000596627.1	IRGC-202	926	275aa	ENSP00000471425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R0T1	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 926 bps, Translation length: 275 residues

Transcript Support Level (TSL)

TSL:2

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000596627.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000596627.1 IRGC-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000596627.1 IRGC-202

Summary

About Us

Get help

Our sister sites

Follow us