Transcript: ENST00000680229.1 MEP1A-203

Description

meprin A subunit alpha [Source:HGNC Symbol;Acc:HGNC:7015]

Gene Synonyms

PPHA

Location

Chromosome 6: 46,793,391-46,839,166 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 1 domain and feature, is associated with 21358 variant alleles and maps to 505 oligo probes.

Gene

This transcript is a product of gene ENSG00000112818.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000230588.9	MEP1A-201	2893	746aa	ENSP00000230588.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4918	Q16819	NM_005588.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000611727.2	MEP1A-202	2363	774aa	ENSP00000480465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZL91	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000680229.1	MEP1A-203	2301	278aa	ENSP00000505289.1	Nonsense mediated decay		A0A7P0Z478	-	-
ENST00000680769.1	MEP1A-204	2441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 9, Transcript length: 2,301 bps, Translation length: 278 residues

Version

ENST00000680229.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000680229.1 MEP1A-203

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Transcript: ENST00000680229.1 MEP1A-203

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