Transcript: ENST00000261590.13 DSG2-201

Description

desmoglein 2 [Source:HGNC Symbol;Acc:HGNC:3049]

Gene Synonyms

CDHF5

Location

Chromosome 18: 31,498,177-31,549,008 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 73 domains and features, is associated with 21180 variant alleles and maps to 671 oligo probes.

Gene

This transcript is a product of gene ENSG00000046604.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000261590.13	DSG2-201	5697	1118aa	ENSP00000261590.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42423	Q14126	NM_001943.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000713780.1	DSG2-211	8311	940aa	ENSP00000519082.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713819.1	DSG2-218	5978	1115aa	ENSP00000519123.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713817.1	DSG2-216	5944	1115aa	ENSP00000519121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713822.1	DSG2-221	5913	1110aa	ENSP00000519126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713762.1	DSG2-208	5749	940aa	ENSP00000519063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713821.1	DSG2-220	5739	1106aa	ENSP00000519125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713832.1	DSG2-225	5585	805aa	ENSP00000519137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713835.1	DSG2-228	5472	940aa	ENSP00000519140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713823.1	DSG2-222	5466	1087aa	ENSP00000519127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713779.1	DSG2-210	5465	940aa	ENSP00000519081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713818.1	DSG2-217	5421	1007aa	ENSP00000519122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713824.1	DSG2-223	5364	1064aa	ENSP00000519128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713825.1	DSG2-224	5198	1018aa	ENSP00000519129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713782.1	DSG2-213	1972	149aa	ENSP00000519084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000682241.3	DSG2-204	1156	241aa	ENSP00000507600.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A804HJQ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585206.1	DSG2-202	1081	232aa	ENSP00000462503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000683654.2	DSG2-206	971	248aa	ENSP00000506971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A804HIA2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713783.1	DSG2-214	939	294aa	ENSP00000519085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000713781.1	DSG2-212	6064	381aa	ENSP00000519083.1	Nonsense mediated decay		-	-	-
ENST00000713820.1	DSG2-219	5974	35aa	ENSP00000519124.1	Nonsense mediated decay		-	-	-
ENST00000713784.1	DSG2-215	5969	203aa	ENSP00000519086.1	Nonsense mediated decay		-	-	-
ENST00000713834.1	DSG2-227	5519	350aa	ENSP00000519139.1	Nonsense mediated decay		-	-	-
ENST00000713833.1	DSG2-226	5453	93aa	ENSP00000519138.1	Nonsense mediated decay		-	-	-
ENST00000713767.1	DSG2-209	4177	104aa	ENSP00000519068.1	Nonsense mediated decay		-	-	-
ENST00000713855.1	DSG2-229	2584	338aa	ENSP00000519160.1	Nonsense mediated decay		-	-	-
ENST00000683614.2	DSG2-205	3173	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000684461.1	DSG2-207	1722	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000682087.2	DSG2-203	1326	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 5,697 bps, Translation length: 1,118 residues

MANE

This MANE Select transcript contains ENSP00000261590 and matches to NM_001943.5 and NP_001934.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14126

CCDS

This transcript is a member of the Human CCDS set: CCDS42423

Transcript Support Level (TSL)

TSL:1

Version

ENST00000261590.13

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000261590.13 DSG2-201

Summary

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Transcript: ENST00000261590.13 DSG2-201

Summary

About Us

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