Transcript: ENST00000697338.1 NOS2-204

Description

nitric oxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:7873]

Gene Synonyms

HEP-NOS, INOS, NOS, NOS2A

Location

Chromosome 17: 27,756,786-27,793,694 reverse strand.

About this transcript

This transcript has 25 exons, is associated with 16570 variant alleles and maps to 741 oligo probes.

Gene

This transcript is a product of gene ENSG00000007171.19 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000313735.11	NOS2-201	4206	1153aa	ENSP00000327251.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11223	P35228-1	NM_000625.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000646938.1	NOS2-202	3995	1152aa	ENSP00000494870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8YDS4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000697339.1	NOS2-205	2884	807aa	ENSP00000513261.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TKX9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000697337.1	NOS2-203	5071	134aa	ENSP00000513259.1	Nonsense mediated decay		A0A8V8TLB1	-	-
ENST00000697340.1	NOS2-206	4131	478aa	ENSP00000513262.1	Nonsense mediated decay		A0A8V8TKZ7	-	-
ENST00000697338.1	NOS2-204	3770	133aa	ENSP00000513260.1	Nonsense mediated decay		A0A8V8TMI7	-	-
ENST00000697341.1	NOS2-207	2845	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 25, Coding exons: 4, Transcript length: 3,770 bps, Translation length: 133 residues

Version

ENST00000697338.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000697338.1 NOS2-204

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Transcript: ENST00000697338.1 NOS2-204

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