RNA-binding Fox protein 1
Rbfox1
Primary_assembly 3L: 10,516,003-10,590,967 forward strand.
This transcript has 15 exons, is annotated with 29 domains and features and maps to 33 oligo probes.
This transcript is a product of gene FBgn0052062 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| FBtr0305093 | Rbfox1-RH | 6692 | 962aa | FBpp0293630 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NFQ7 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| FBtr0305095 | Rbfox1-RJ | 6610 | 889aa | FBpp0293632 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A1B1R4Q5 Q9VT99 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0305096 | Rbfox1-RK | 6097 | 921aa | FBpp0293633 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VT98 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0332985 | Rbfox1-RM | 5584 | 547aa | FBpp0305201 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A1B1R4Q4 M9PF74 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0305097 | Rbfox1-RL | 3944 | 858aa | FBpp0293634 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9ND74 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0113418 | Rbfox1-RE | 3508 | 865aa | FBpp0112330 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7YU08 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0113419 | Rbfox1-RF | 3413 | 763aa | FBpp0112331 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A1B1R4Q5 A8JNQ5 Q8MSP1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0305094 | Rbfox1-RI | 3244 | 796aa | FBpp0293631 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JNQ4 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0473371 | Rbfox1-RN | 2966 | 614aa | FBpp0422975 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A140HLF6 A0A4D6K632 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |