Transcript: ENSDART00000016597.6 nfkbiab-201

Description

nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-1819]

Location

Chromosome 17: 12,942,634-12,946,736 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 25 domains and features, is associated with 398 variant alleles and maps to 317 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007693.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000016597.6	nfkbiab-201	1354	312aa	ENSDARP00000015303.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZW68	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000192514.1	nfkbiab-204	5069	313aa	ENSDARP00000153029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000146744.2	nfkbiab-203	832	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000143133.2	nfkbiab-202	768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,354 bps, Translation length: 312 residues

Version

ENSDART00000016597.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000016597.6 nfkbiab-201

Summary

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Transcript: ENSDART00000016597.6 nfkbiab-201

Summary

About Us

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