Transcript: ENSDART00000166819.2 sugt1-203

Description

SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:ZFIN;Acc:ZDB-GENE-041114-56]

Location

Chromosome 1: 27,977,331-28,019,225 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 15 domains and features, is associated with 339 variant alleles and maps to 275 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000100083.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166819.2	sugt1-203	1580	322aa	ENSDARP00000135565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3E4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000180692.1	sugt1-205	2557	330aa	ENSDARP00000148100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000164984.2	sugt1-202	640	36aa	ENSDARP00000139631.1	Nonsense mediated decay	-	-
ENSDART00000171868.2	sugt1-204	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000162589.2	sugt1-201	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,580 bps, Translation length: 322 residues

Version

ENSDART00000166819.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000166819.2 sugt1-203

Summary

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Transcript: ENSDART00000166819.2 sugt1-203

Summary

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