Transcript: ENSDART00000148323.2 mhc2bl-202

Description

MHC class II beta chain-like [Source:ZFIN;Acc:ZDB-GENE-030616-99]

Gene Synonyms

MHC class II, beta chain, si:busm1-104n07.3, si:dz104n07.3

Location

Chromosome 8: 36,368,530-36,370,595 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 315 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074510.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000097932.5	mhc2bl-201	3506	250aa	ENSDARP00000088705.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QVI4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000148323.2	mhc2bl-202	723	241aa	ENSDARP00000116857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RBP5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 723 bps, Translation length: 241 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000148323.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148323.2 mhc2bl-202

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Transcript: ENSDART00000148323.2 mhc2bl-202

Summary

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