Transcript: ENSDART00000136418.3 sf3a1-203

Description

splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]

Location

Chromosome 8: 36,560,019-36,562,358 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 281 variant alleles and maps to 85 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000041887.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185237.1	sf3a1-204	3167	780aa	ENSDARP00000150615.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X41	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000126687.4	sf3a1-202	3057	780aa	ENSDARP00000108576.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X41	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000061378.3	sf3a1-201	2756	780aa	ENSDARP00000061377.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X41	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136418.3	sf3a1-203	705	171aa	ENSDARP00000113481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 705 bps, Translation length: 171 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000136418.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136418.3 sf3a1-203

Summary

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Transcript: ENSDART00000136418.3 sf3a1-203

Summary

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