Transcript: ENSDART00000163478.2 cpsf1-202

Description

cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]

Location

Chromosome 19: 11,897,862-11,949,996 reverse strand.

About this transcript

This transcript has 37 exons, is annotated with 17 domains and features, is associated with 1641 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000034178.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163478.2	cpsf1-202	4356	1451aa	ENSDARP00000130523.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IC37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000168308.2	cpsf1-204	4825	1125aa	ENSDARP00000135813.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000024861.11	cpsf1-201	4746	1448aa	ENSDARP00000023736.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NXE7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000167299.2	cpsf1-203	1203	400aa	ENSDARP00000134781.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 37, Coding exons: 37, Transcript length: 4,356 bps, Translation length: 1,451 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A0R4IC37

Version

ENSDART00000163478.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000163478.2 cpsf1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000163478.2 cpsf1-202

Summary

About Us

Get help

Our sister sites

Follow us