Transcript: ENSDART00000157035.3 rps27a-205

Description

ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]

Gene Synonyms

hm:zeh0386, ik:tdsubc_1f2, tdsubc_1f2, xx:tdsubc_1f2, zgc:66168

Location

Chromosome 6: 6,271,793-6,273,517 forward strand.

About this transcript

This transcript has 3 exons, is associated with 150 variant alleles and maps to 171 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000032725.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000156859.2	rps27a-204	721	156aa	ENSDARP00000128775.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SXA3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000129530.4	rps27a-201	668	156aa	ENSDARP00000107110.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SXA3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000154932.2	rps27a-202	601	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000157035.3	rps27a-205	820	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000156817.3	rps27a-203	684	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 820 bps,

Version

ENSDART00000157035.3

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000157035.3 rps27a-205

Summary

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Transcript: ENSDART00000157035.3 rps27a-205

Summary

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