Transcript: ENSDART00000173406.2 obscnb-204

Description

obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF b [Source:ZFIN;Acc:ZDB-GENE-070119-5]

Gene Synonyms

obscnl, obscurin A, si:rp71-18a8.2

Location

Chromosome 24: 35,947,077-35,961,553 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 120 domains and features, is associated with 409 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000022101.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173406.2	obscnb-204	4979	1660aa	ENSDARP00000142063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LFP0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000157373.3	obscnb-201	4440	1480aa	ENSDARP00000129075.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WFS0	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000173322.2	obscnb-203	3255	1010aa	ENSDARP00000142503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LGX4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173058.2	obscnb-202	586	195aa	ENSDARP00000142069.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LFP6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 4,979 bps, Translation length: 1,660 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000173406.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000173406.2 obscnb-204

Summary

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Transcript: ENSDART00000173406.2 obscnb-204

Summary

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