Transcript: ENSDART00000146597.2 RAPH1-201

Description

wu:fj59g11 [Source:ZFIN;Acc:ZDB-GENE-030131-8202]

Gene Synonyms

fj59g11

Location

Chromosome 9: 13,820,147-13,871,935 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 30 domains and features, is associated with 74 variant alleles and maps to 105 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000006301.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061156.7	RAPH1-204	4399	1346aa	ENSDARP00000061155.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q4V7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000193398.1	RAPH1-203	4324	1321aa	ENSDARP00000150305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QAD9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000146597.2	RAPH1-201	2010	670aa	ENSDARP00000118640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0UZ28	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132960.2	RAPH1-202	774	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,010 bps, Translation length: 670 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000146597.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000146597.2 RAPH1-201

Summary

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Transcript: ENSDART00000146597.2 RAPH1-201

Summary

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