Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: col12a1a ENSDARG00000078322

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Description

collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]

Gene Synonyms

col12a1, fa99f12, wu:fa99f12

Location

Chromosome 17: 49,785,495-49,978,986 reverse strand.

GRCz11:CM002901.2

About this gene

This gene has 4 transcripts (splice variants), 77 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154728.3	col12a1a-201	10560	2975aa	ENSDARP00000128902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WF98	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183735.1	col12a1a-204	8928	2975aa	ENSDARP00000156139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WF98	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156264.2	col12a1a-202	940	247aa	ENSDARP00000128992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WFI8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000157322.2	col12a1a-203	630	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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