Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: clcn2a ENSDARG00000062427

.

Description

chloride channel, voltage-sensitive 2a [Source:ZFIN;Acc:ZDB-GENE-070705-19]

Gene Synonyms

clc-2a, clcn2, si:ch211-117k11.1

Location

Chromosome 2: 16,885,285-17,044,959 reverse strand.

GRCz11:CM002886.2

About this gene

This gene has 3 transcripts (splice variants), 206 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000090260.6	clcn2a-201	3380	979aa	ENSDARP00000084693.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5F4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145720.3	clcn2a-203	1970	656aa	ENSDARP00000123262.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMN6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000135579.2	clcn2a-202	800	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

.

Summary

.

.