Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL28A1 ENSBTAG00000024420

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Description

collagen type XXVIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:107219]

Location

Primary_assembly 4: 15,424,636-15,607,091 reverse strand.

ARS-UCD1.3:CM008171.2

About this gene

This gene has 5 transcripts (splice variants), 115 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000033859.5	COL28A1-205	3667	1129aa	ENSBTAP00000033767.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BPV7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000109423.1	COL28A1-201	4521	1101aa	ENSBTAP00000097749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000115260.1	COL28A1-202	4330	1124aa	ENSBTAP00000087303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000119270.1	COL28A1-203	3704	1124aa	ENSBTAP00000097484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000067622.2	COL28A1-204	3698	1123aa	ENSBTAP00000062228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LYA4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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