Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: LSM10 ENSBTAG00000024096

.

Description

LSM10, U7 small nuclear RNA associated [Source:VGNC Symbol;Acc:VGNC:31051]

Location

Primary_assembly 3: 109,481,078-109,504,593 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 5 transcripts (splice variants) and 183 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000113070.1	LSM10-204	1178	169aa	ENSBTAP00000101042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000128715.1	LSM10-202	3882	122aa	ENSBTAP00000091112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000114762.1	LSM10-201	1518	122aa	ENSBTAP00000099105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000033237.6	LSM10-205	859	122aa	ENSBTAP00000033157.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4IFN1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000113644.1	LSM10-203	761	137aa	ENSBTAP00000088720.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

.

Summary

.

.