Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SLC1A4 ENSBTAG00000007763

.

Description

solute carrier family 1 member 4 [Source:VGNC Symbol;Acc:VGNC:34714]

Location

Primary_assembly 11: 63,379,682-63,409,616 forward strand.

ARS-UCD1.3:CM008178.2

About this gene

This gene has 4 transcripts (splice variants), 208 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000010206.7	SLC1A4-202	4453	538aa	ENSBTAP00000010206.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VDL4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000135569.1	SLC1A4-203	4185	525aa	ENSBTAP00000086538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000129166.1	SLC1A4-204	3306	232aa	ENSBTAP00000079994.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000074260.2	SLC1A4-201	2688	485aa	ENSBTAP00000064802.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M8M2	-

.

Summary

.

.