Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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ID History
- Gene history

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Gene: ATP5F1C ENSBTAG00000013930

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Description

ATP synthase F1 subunit gamma [Source:VGNC Symbol;Acc:VGNC:26301]

Gene Synonyms

ATP5C1

Location

Primary_assembly 13: 16,092,866-16,109,748 reverse strand.

ARS-UCD1.3:CM008180.2

About this gene

This gene has 2 transcripts (splice variants) and 246 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000018505.6	ATP5F1C-202	1092	298aa	ENSBTAP00000018505.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P05631	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000076091.2	ATP5F1C-201	1594	297aa	ENSBTAP00000060497.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P05631	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data