Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
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Pathway
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External references
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ID History
- Gene history

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Gene: POLR1E ENSBTAG00000012243

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Description

RNA polymerase I subunit E [Source:VGNC Symbol;Acc:VGNC:33134]

Location

Primary_assembly 8: 61,610,347-61,673,349 forward strand.

ARS-UCD1.3:CM008175.2

About this gene

This gene has 6 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000016250.5	POLR1E-201	1470	419aa	ENSBTAP00000016250.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3SZ29	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000105461.1	POLR1E-206	1602	407aa	ENSBTAP00000090845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000120688.1	POLR1E-203	1462	387aa	ENSBTAP00000087075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000125291.1	POLR1E-204	1273	390aa	ENSBTAP00000098345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000115686.1	POLR1E-205	1258	395aa	ENSBTAP00000080812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000122197.1	POLR1E-202	1220	396aa	ENSBTAP00000078933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data