Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SMG8 ENSBTAG00000003365

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Description

SMG8 nonsense mediated mRNA decay factor [Source:VGNC Symbol;Acc:VGNC:55871]

Location

Primary_assembly 19: 10,161,472-10,230,642 forward strand.

ARS-UCD1.3:CM008186.2

About this gene

This gene has 7 transcripts (splice variants) and 210 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000004365.6	SMG8-204	3168	1024aa	ENSBTAP00000004365.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MZ61	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000052191.3	SMG8-202	3936	969aa	ENSBTAP00000051930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1A4J7	-
ENSBTAT00000077804.2	SMG8-203	3602	1004aa	ENSBTAP00000063515.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0K5	-
ENSBTAT00000101881.1	SMG8-201	2875	925aa	ENSBTAP00000084917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000048450.4	SMG8-206	1155	314aa	ENSBTAP00000045487.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N2J0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000079775.2	SMG8-205	993	295aa	ENSBTAP00000068229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NAF1	-
ENSBTAT00000088771.1	SMG8-207	957	283aa	ENSBTAP00000091755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data