Transcript: Y53H1A.2a.1 Y53H1A.2-202

Description

C2H2-type domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:173016]

Location

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features and maps to 67 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
Y53H1A.2b.1	Y53H1A.2-201	645	214aa	Y53H1A.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1V8K4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Y53H1A.2a.1	Y53H1A.2-202	826	211aa	Y53H1A.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1V8K3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y53H1A.2c	Y53H1A.2-203	222	No protein	-	A non-coding gene.ncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 826 bps, Translation length: 211 residues

Version

Y53H1A.2a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase