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Transcript: MGP_WSBEiJ_T0061182.1

Description

regulatory factor X, 5 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1858421]

Location

Chromosome 3: 94,862,677-94,869,919 forward strand.

Reference strain equivalent

Rfx5

About this transcript

This transcript has 11 exons, is annotated with 29 domains and features and maps to 154 oligo probes.

Gene

This transcript is a product of gene MGP_WSBEiJ_G0026798.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_WSBEiJ_T0061184.1-4333658aaMGP_WSBEiJ_P0061184
 
Protein coding
-Ensembl Canonical
MGP_WSBEiJ_T0061189.1-4450303aaMGP_WSBEiJ_P0061189
 
Protein coding
--
MGP_WSBEiJ_T0061192.1-4367303aaMGP_WSBEiJ_P0061192
 
Protein coding
--
MGP_WSBEiJ_T0061197.1-4189658aaMGP_WSBEiJ_P0061197
 
Protein coding
--
MGP_WSBEiJ_T0061182.1-2355658aaMGP_WSBEiJ_P0061182
 
Protein coding
CCDS17598D3YTK4 D3YVW1 D3YZK7
D3Z0D4 D6RDE5 K4DI79
Q6DI69 Q9JL61 		-
MGP_WSBEiJ_T0061196.1-2350658aaMGP_WSBEiJ_P0061196
 
Protein coding
--
MGP_WSBEiJ_T0061193.1-882181aaMGP_WSBEiJ_P0061193
 
Protein coding
--
MGP_WSBEiJ_T0061195.1-565105aaMGP_WSBEiJ_P0061195
 
Protein coding
--
MGP_WSBEiJ_T0061185.1-53890aaMGP_WSBEiJ_P0061185
 
Protein coding
--
MGP_WSBEiJ_T0061194.1-53695aaMGP_WSBEiJ_P0061194
 
Protein coding
--
MGP_WSBEiJ_T0061183.1-486131aaMGP_WSBEiJ_P0061183
 
Protein coding
--
MGP_WSBEiJ_T0061186.1-401441aaMGP_WSBEiJ_P0061186
 
Nonsense mediated decay
--
MGP_WSBEiJ_T0061188.1-70541aaMGP_WSBEiJ_P0061188
 
Nonsense mediated decay
--
MGP_WSBEiJ_T0061190.1-52541aaMGP_WSBEiJ_P0061190
 
Nonsense mediated decay
--
MGP_WSBEiJ_T0061187.1-346No protein-
 
Processed transcript
--
MGP_WSBEiJ_T0061191.1-4139No protein-
 
Retained intron
--
MGP_WSBEiJ_T0061198.1-680No protein-
 
Retained intron
--

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 2,355 bps, Translation length: 658 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JL61

CCDS

This transcript is a member of the Mouse WSB/EiJ CCDS set: CCDS17598

Version

MGP_WSBEiJ_T0061182.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.