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Transcript: MGP_WSBEiJ_T0041489.1

Description

collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]

Gene Synonyms

Col2, Col2a, Col2a-1, Del1, Dmm, Lpk, M100856, Rgsc856

Location

Chromosome 15: 99,275,311-99,305,961 reverse strand.

Reference strain equivalent

Col2a1

About this transcript

This transcript has 54 exons, is annotated with 58 domains and features and maps to 437 oligo probes.

Gene

This transcript is a product of gene MGP_WSBEiJ_G0021589.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_WSBEiJ_T0041489.1-51061487aaMGP_WSBEiJ_P0041489
 
Protein coding
CCDS37189, CCDS49716D3Z7T2 P28481 Ensembl Canonical
MGP_WSBEiJ_T0041490.1-48641419aaMGP_WSBEiJ_P0041490
 
Protein coding
--
MGP_WSBEiJ_T0041496.1-538132aaMGP_WSBEiJ_P0041496
 
Protein coding
--
MGP_WSBEiJ_T0041495.1-715No protein-
 
Processed transcript
--
MGP_WSBEiJ_T0041494.1-626No protein-
 
Processed transcript
--
MGP_WSBEiJ_T0041492.1-491No protein-
 
Processed transcript
--
MGP_WSBEiJ_T0041493.1-809No protein-
 
Retained intron
--
MGP_WSBEiJ_T0041491.1-654No protein-
 
Retained intron
--
MGP_WSBEiJ_T0041497.1-613No protein-
 
Retained intron
--

Summary

Statistics

Exons: 54, Coding exons: 54, Transcript length: 5,106 bps, Translation length: 1,487 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28481

CCDS

This transcript is a member of the Mouse WSB/EiJ CCDS set: CCDS37189, CCDS49716

Version

MGP_WSBEiJ_T0041489.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.