Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Smc1a MGP_PahariEiJ_G0032037

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Description

structural maintenance of chromosomes 1A [Source:MGI Symbol;Acc:MGI:1344345]

Location

Chromosome X: 129,908,382-129,951,486 forward strand.

PAHARI_EIJ_v1.1:LT608300.1

About this gene

This gene has 6 transcripts (splice variants), 209 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0090693.1	Smc1a-202	4702	1233aa	MGP_PahariEiJ_P0090693	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0090692.1	Smc1a-201	1825	54aa	MGP_PahariEiJ_P0090692	Nonsense mediated decay	-
MGP_PahariEiJ_T0090696.1	Smc1a-205	646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0090694.1	Smc1a-203	612	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0090697.1	Smc1a-206	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0090695.1	Smc1a-204	502	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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