Transcript: MGP_NODShiLtJ_T0078957.1

Description

RNA pseudouridylate synthase domain containing 3 [Source:MGI Symbol;Acc:MGI:2141440]

Gene Synonyms

AI527266

Location

Chromosome 6: 127,899,429-127,903,456 reverse strand.

Reference strain equivalent

Rpusd3

About this transcript

This transcript has 9 exons, is annotated with 10 domains and features and maps to 162 oligo probes.

Gene

This transcript is a product of gene MGP_NODShiLtJ_G0030929.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_NODShiLtJ_T0078957.1	-	1269	344aa	MGP_NODShiLtJ_P0078957	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51872	B7ZMQ0 D3YVC8 F6UDW0 F6WLR1 Q14AI6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_NODShiLtJ_T0078958.1	-	1224	279aa	MGP_NODShiLtJ_P0078958	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_NODShiLtJ_T0078960.1	-	1045	315aa	MGP_NODShiLtJ_P0078960	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_NODShiLtJ_T0078961.1	-	805	268aa	MGP_NODShiLtJ_P0078961	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_NODShiLtJ_T0078963.1	-	549	182aa	MGP_NODShiLtJ_P0078963	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_NODShiLtJ_T0078965.1	-	365	117aa	MGP_NODShiLtJ_P0078965	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_NODShiLtJ_T0078962.1	-	782	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_NODShiLtJ_T0078966.1	-	757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_NODShiLtJ_T0078964.1	-	522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_NODShiLtJ_T0078959.1	-	321	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,269 bps, Translation length: 344 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14AI6

CCDS

This transcript is a member of the Mouse NOD/ShiLtJ CCDS set: CCDS51872

Version

MGP_NODShiLtJ_T0078957.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_NODShiLtJ_T0078957.1

Summary

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Transcript: MGP_NODShiLtJ_T0078957.1

Summary

About Us

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