Ensembl mirror
More ▼
Search »
Mouse NOD/ShiLtJ (NOD_ShiLtJ_v1) ▼

Favourite species

All species

Recent locations

Transcript-based displays

Configure this page

Custom tracks

Export data

Bookmark this page

Transcript: MGP_NODShiLtJ_T0054735.1

Description

sodium channel, voltage-gated, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:98248]

Gene Synonyms

6430408L10, A230052E19Rik, Nav1.2, Scn2a

Location

Chromosome 2: 71,856,348-72,000,271 forward strand.

Reference strain equivalent

Scn2a

About this transcript

This transcript has 30 exons, is annotated with 2 domains and features and maps to 719 oligo probes.

Gene

This transcript is a product of gene MGP_NODShiLtJ_G0025616.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_NODShiLtJ_T0054739.1-59631878aaMGP_NODShiLtJ_P0054739
 
Protein coding
-Ensembl Canonical
MGP_NODShiLtJ_T0054735.1-83581823aaMGP_NODShiLtJ_P0054735
 
Protein coding
CCDS38130A0A0J9YTW6 A0A0J9YTX0 A9JQD3
B1AWN6 F7AMU5 		-
MGP_NODShiLtJ_T0054740.1-81131823aaMGP_NODShiLtJ_P0054740
 
Protein coding
--
MGP_NODShiLtJ_T0054736.1-1810504aaMGP_NODShiLtJ_P0054736
 
Protein coding
--
MGP_NODShiLtJ_T0054742.1-576106aaMGP_NODShiLtJ_P0054742
 
Nonsense mediated decay
--
MGP_NODShiLtJ_T0054743.1-51398aaMGP_NODShiLtJ_P0054743
 
Nonsense mediated decay
--
MGP_NODShiLtJ_T0054737.1-2454No protein-
 
Retained intron
--
MGP_NODShiLtJ_T0054738.1-1479No protein-
 
Retained intron
--
MGP_NODShiLtJ_T0054741.1-698No protein-
 
Retained intron
--

Summary

Statistics

Exons: 30, Coding exons: 28, Transcript length: 8,358 bps, Translation length: 1,823 residues

CCDS

This transcript is a member of the Mouse NOD/ShiLtJ CCDS set: CCDS38130

Version

MGP_NODShiLtJ_T0054735.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.