Transcript: MGP_LPJ_T0085040.1

Description

autophagy related 16-like 2 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1920933]

Gene Synonyms

2410118P20Rik, Atg16L2 alpha, Atg16L2 beta

Location

Chromosome 7: 105,572,511-105,585,186 reverse strand.

Reference strain equivalent

Atg16l2

About this transcript

This transcript has 17 exons, is annotated with 4 domains and features and maps to 228 oligo probes.

Gene

This transcript is a product of gene MGP_LPJ_G0032490.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_LPJ_T0085041.1	-	2165	623aa	MGP_LPJ_P0085041	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_LPJ_T0085043.1	-	2083	602aa	MGP_LPJ_P0085043	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0085051.1	-	377	125aa	MGP_LPJ_P0085051	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0085044.1	-	2655	403aa	MGP_LPJ_P0085044	Nonsense mediated decay		-	-
MGP_LPJ_T0085040.1	-	2501	403aa	MGP_LPJ_P0085040	Nonsense mediated decay	CCDS52329	A0A140LHW3 A0A140LIS0 D3Z653 D6RHC1 G9M4M8 Q6KAU8	-
MGP_LPJ_T0085054.1	-	459	81aa	MGP_LPJ_P0085054	Nonsense mediated decay		-	-
MGP_LPJ_T0085048.1	-	878	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085050.1	-	829	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085049.1	-	706	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085047.1	-	637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085042.1	-	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085052.1	-	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085053.1	-	518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085045.1	-	423	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0085046.1	-	1968	655aa	MGP_LPJ_P0085046	Unknown likely coding		-	-

Summary

Statistics

Exons: 17, Coding exons: 11, Transcript length: 2,501 bps, Translation length: 403 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6KAU8

CCDS

This transcript is a member of the Mouse LP/J CCDS set: CCDS52329

Version

MGP_LPJ_T0085040.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_LPJ_T0085040.1

Summary

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Transcript: MGP_LPJ_T0085040.1

Summary

About Us

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