Transcript: MGP_LPJ_T0073170.1

Description

Hermansky-Pudlak syndrome 4 [Source:MGI Symbol;Acc:MGI:2177742]

Gene Synonyms

2010205O06Rik, AU040608, BLOC-3, C130020P05Rik, Le, le, mKIAA1667

Location

Chromosome 5: 115,487,108-115,522,363 forward strand.

Reference strain equivalent

Hps4

About this transcript

This transcript has 14 exons, is annotated with 12 domains and features and maps to 253 oligo probes.

Gene

This transcript is a product of gene MGP_LPJ_G0029807.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_LPJ_T0073170.1	-	3345	671aa	MGP_LPJ_P0073170	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19540	Q541V2 Q99KG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_LPJ_T0073173.1	-	2836	671aa	MGP_LPJ_P0073173	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0073174.1	-	820	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_LPJ_T0073171.1	-	734	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_LPJ_T0073172.1	-	3189	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0073177.1	-	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0073176.1	-	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 3,345 bps, Translation length: 671 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99KG7

CCDS

This transcript is a member of the Mouse LP/J CCDS set: CCDS19540

Version

MGP_LPJ_T0073170.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_LPJ_T0073170.1

Summary

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Transcript: MGP_LPJ_T0073170.1

Summary

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