Transcript: MGP_LPJ_T0051562.1

Description

PDZ and LIM domain 1 (elfin) [Source:MGI Symbol;Acc:MGI:1860611]

Gene Synonyms

CLP36, Clim1, mClim1

Location

Chromosome 19: 39,458,235-39,511,859 reverse strand.

Reference strain equivalent

Pdlim1

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features and maps to 270 oligo probes.

Gene

This transcript is a product of gene MGP_LPJ_G0025039.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_LPJ_T0051562.1	-	2571	327aa	MGP_LPJ_P0051562	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37977	O70400 S4R1V0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_LPJ_T0051566.1	-	692	198aa	MGP_LPJ_P0051566	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0051567.1	-	2851	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0051564.1	-	715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0051565.1	-	666	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0051563.1	-	1569	405aa	MGP_LPJ_P0051563	Unknown likely coding		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,571 bps, Translation length: 327 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O70400

CCDS

This transcript is a member of the Mouse LP/J CCDS set: CCDS37977

Version

MGP_LPJ_T0051562.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_LPJ_T0051562.1

Summary

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Transcript: MGP_LPJ_T0051562.1

Summary

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