Transcript: MGP_LPJ_T0048719.1

Description

supervillin [Source:MGI Symbol;Acc:MGI:2147319]

Gene Synonyms

AU024053, B430302E16Rik

Location

Chromosome 18: 1,859,389-2,068,811 forward strand.

Reference strain equivalent

Svil

About this transcript

This transcript has 38 exons, is annotated with 51 domains and features and maps to 443 oligo probes.

Gene

This transcript is a product of gene MGP_LPJ_G0024038.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_LPJ_T0048719.1	-	7905	2170aa	MGP_LPJ_P0048719	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37720	D3Z2X9 E9Q3Z5 F6R6A4 F6TBK9 Q8K4L2 Q8K4L3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_LPJ_T0048728.1	-	7431	2170aa	MGP_LPJ_P0048728	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0048723.1	-	7423	2170aa	MGP_LPJ_P0048723	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0048726.1	-	6243	2056aa	MGP_LPJ_P0048726	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0048725.1	-	5562	1853aa	MGP_LPJ_P0048725	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0048731.1	-	507	168aa	MGP_LPJ_P0048731	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0048722.1	-	497	40aa	MGP_LPJ_P0048722	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0048727.1	-	6420	2031aa	MGP_LPJ_P0048727	Nonsense mediated decay		-	-
MGP_LPJ_T0048729.1	-	4058	748aa	MGP_LPJ_P0048729	Nonsense mediated decay		-	-
MGP_LPJ_T0048724.1	-	1178	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_LPJ_T0048732.1	-	1712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0048720.1	-	1560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0048721.1	-	1430	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0048730.1	-	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 38, Coding exons: 35, Transcript length: 7,905 bps, Translation length: 2,170 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K4L3

CCDS

This transcript is a member of the Mouse LP/J CCDS set: CCDS37720

Version

MGP_LPJ_T0048719.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_LPJ_T0048719.1

Summary

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Transcript: MGP_LPJ_T0048719.1

Summary

About Us

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