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Transcript: MGP_LPJ_T0020028.1

Description

calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]

Gene Synonyms

Als2cr8, ECBRC-FC1, ECBRC-FC2

Location

Chromosome 1: 61,029,751-61,083,458 forward strand.

Reference strain equivalent

Carf

About this transcript

This transcript has 17 exons, is annotated with 5 domains and features and maps to 203 oligo probes.

Gene

This transcript is a product of gene MGP_LPJ_G0015989.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_LPJ_T0020032.1-2287672aaMGP_LPJ_P0020032
 
Protein coding
-Ensembl Canonical
MGP_LPJ_T0020030.1-41079aaMGP_LPJ_P0020030
 
Protein coding
--
MGP_LPJ_T0020028.1-267887aaMGP_LPJ_P0020028
 
Nonsense mediated decay
CCDS14989, CCDS78592A0A087WPQ8 A8VI08 A8VI09
D3Z2W4 M0QWJ8 Q8VHI4
-
MGP_LPJ_T0020033.1-1752226aaMGP_LPJ_P0020033
 
Nonsense mediated decay
--
MGP_LPJ_T0020035.1-49354aaMGP_LPJ_P0020035
 
Nonsense mediated decay
--
MGP_LPJ_T0020029.1-3795No protein-
 
Retained intron
--
MGP_LPJ_T0020031.1-3234No protein-
 
Retained intron
--
MGP_LPJ_T0020034.1-2416No protein-
 
Retained intron
--

Summary

Statistics

Exons: 17, Coding exons: 4, Transcript length: 2,678 bps, Translation length: 87 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VHI4

CCDS

This transcript is a member of the Mouse LP/J CCDS set: CCDS14989, CCDS78592

Version

MGP_LPJ_T0020028.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.