Transcript: MGP_FVBNJ_T0082910.1

Description

ankyrin repeat domain 27 (VPS9 domain) [Source:MGI Symbol;Acc:MGI:2444103]

Gene Synonyms

AA408090, BC016493, D330003H11Rik, Varp

Location

Chromosome 7: 33,829,253-33,882,907 forward strand.

Reference strain equivalent

Ankrd27

About this transcript

This transcript has 29 exons, is annotated with 55 domains and features and maps to 293 oligo probes.

Gene

This transcript is a product of gene MGP_FVBNJ_G0031870.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_FVBNJ_T0082910.1	-	4284	1048aa	MGP_FVBNJ_P0082910	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21154, CCDS80706	A0A087WPF2 A0A087WS06 A0A0R4J2C4 A0A0U1RP40 A0A0U1RPG1 A0A0U1RPT7 Q3UMR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_FVBNJ_T0082915.1	-	4086	993aa	MGP_FVBNJ_P0082915	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_FVBNJ_T0082911.1	-	1926	377aa	MGP_FVBNJ_P0082911	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_FVBNJ_T0082918.1	-	693	230aa	MGP_FVBNJ_P0082918	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_FVBNJ_T0082912.1	-	405	85aa	MGP_FVBNJ_P0082912	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_FVBNJ_T0082913.1	-	3583	388aa	MGP_FVBNJ_P0082913	Nonsense mediated decay		-	-
MGP_FVBNJ_T0082914.1	-	797	76aa	MGP_FVBNJ_P0082914	Nonsense mediated decay		-	-
MGP_FVBNJ_T0082919.1	-	475	23aa	MGP_FVBNJ_P0082919	Nonsense mediated decay		-	-
MGP_FVBNJ_T0082916.1	-	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_FVBNJ_T0082917.1	-	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 29, Coding exons: 28, Transcript length: 4,284 bps, Translation length: 1,048 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UMR0

CCDS

This transcript is a member of the Mouse FVB/NJ CCDS set: CCDS21154, CCDS80706

Version

MGP_FVBNJ_T0082910.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_FVBNJ_T0082910.1

Summary

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Transcript: MGP_FVBNJ_T0082910.1

Summary

About Us

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