Transcript: MGP_FVBNJ_T0021340.1

Description

autophagy related 4B, cysteine peptidase [Source:MGI Symbol;Acc:MGI:1913865]

Gene Synonyms

2510009N07Rik, AW048066, Apg4b, Atg4bl, Autl1, autophagin 1

Location

Chromosome 1: 90,243,560-90,268,776 forward strand.

Reference strain equivalent

Atg4b

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features and maps to 58 oligo probes.

Gene

This transcript is a product of gene MGP_FVBNJ_G0016192.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_FVBNJ_T0021341.1	-	4177	393aa	MGP_FVBNJ_P0021341	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_FVBNJ_T0021340.1	-	513	150aa	MGP_FVBNJ_P0021340	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15195	A0A087WNR6 A0A087WNY2 A0A087WRT0 A0A0R4J065 D3YZP6	-
MGP_FVBNJ_T0021342.1	-	420	121aa	MGP_FVBNJ_P0021342	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_FVBNJ_T0021343.1	-	919	143aa	MGP_FVBNJ_P0021343	Nonsense mediated decay		-	-
MGP_FVBNJ_T0021348.1	-	502	63aa	MGP_FVBNJ_P0021348	Nonsense mediated decay		-	-
MGP_FVBNJ_T0021345.1	-	343	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_FVBNJ_T0021344.1	-	4185	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_FVBNJ_T0021350.1	-	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_FVBNJ_T0021346.1	-	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_FVBNJ_T0021347.1	-	478	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_FVBNJ_T0021349.1	-	454	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 513 bps, Translation length: 150 residues

CCDS

This transcript is a member of the Mouse FVB/NJ CCDS set: CCDS15195

Version

MGP_FVBNJ_T0021340.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_FVBNJ_T0021340.1

Summary

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Transcript: MGP_FVBNJ_T0021340.1

Summary

About Us

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