Transcript: MGP_CASTEiJ_T0090261.1

Description

cadherin 8 [Source:MGI Symbol;Acc:MGI:107434]

Gene Synonyms

AI851472, cad8

Location

Chromosome 8: 99,692,431-100,122,068 reverse strand.

Reference strain equivalent

Cdh8

About this transcript

This transcript has 13 exons, is annotated with 51 domains and features and maps to 193 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0033013.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0090264.1	-	4594	799aa	MGP_CASTEiJ_P0090264	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0090263.1	-	3789	716aa	MGP_CASTEiJ_P0090263	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0090267.1	-	3446	247aa	MGP_CASTEiJ_P0090267	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0090261.1	-	3159	754aa	MGP_CASTEiJ_P0090261	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22569, CCDS40448, CCDS72155, CCDS72156	D6RG94 E9PYB2 E9PZC1 E9Q451 P97291 Q8C449	-
MGP_CASTEiJ_T0090262.1	-	2711	711aa	MGP_CASTEiJ_P0090262	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0090265.1	-	4320	509aa	MGP_CASTEiJ_P0090265	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0090266.1	-	1409	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,159 bps, Translation length: 754 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P97291

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS22569, CCDS40448, CCDS72155, CCDS72156

Version

MGP_CASTEiJ_T0090261.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_CASTEiJ_T0090261.1

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: MGP_CASTEiJ_T0090261.1

Summary

About Us

Get help

Our sister sites

Follow us