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Transcript: MGP_CASTEiJ_T0049565.1

Description

synaptopodin [Source:MGI Symbol;Acc:MGI:1099446]

Gene Synonyms

9030217H17Rik, 9130229N11, 9330140I15Rik, AW046661, Kiaa1029

Location

Chromosome 18: 59,510,704-59,543,430 reverse strand.

Reference strain equivalent

Synpo

About this transcript

This transcript has 3 exons, is annotated with 29 domains and features and maps to 185 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0023672.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_CASTEiJ_T0049567.1-51601100aaMGP_CASTEiJ_P0049567
 
Protein coding
-Ensembl Canonical
MGP_CASTEiJ_T0049565.1-5061901aaMGP_CASTEiJ_P0049565
 
Protein coding
CCDS37833, CCDS50298E0CYK1 E9Q3E2 Q3U336
Q3URF1 Q8CC35 		-
MGP_CASTEiJ_T0049571.1-5040929aaMGP_CASTEiJ_P0049571
 
Protein coding
--
MGP_CASTEiJ_T0049566.1-4971901aaMGP_CASTEiJ_P0049566
 
Protein coding
--
MGP_CASTEiJ_T0049570.1-4479690aaMGP_CASTEiJ_P0049570
 
Protein coding
--
MGP_CASTEiJ_T0049569.1-4442690aaMGP_CASTEiJ_P0049569
 
Protein coding
--
MGP_CASTEiJ_T0049572.1-47715aaMGP_CASTEiJ_P0049572
 
Protein coding
--
MGP_CASTEiJ_T0049568.1-2602No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0049574.1-1925No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0049575.1-642No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0049573.1-418No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0049576.1-214No protein-
 
Processed transcript
--

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 5,061 bps, Translation length: 901 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CC35

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS37833, CCDS50298

Version

MGP_CASTEiJ_T0049565.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.