Mouse CAST/EiJ (CAST_EiJ_v1)
Description

intersectin 1 (SH3 domain protein 1A) [Source:MGI Symbol;Acc:MGI:1338069]

Gene Synonyms

AA517634, AA545208, AI316805, AI839402, AI848451, EHSH1, Eh domain, SH3 domain regulator of endocytosis 1, Ehsh1, Ese1, Intersectin-L, Itsn, Sh3p17

Location
Reference strain equivalent
About this transcript

This transcript has 29 exons, is annotated with 82 domains and features and maps to 266 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_CASTEiJ_T0044971.1-74441719aaMGP_CASTEiJ_P0044971
 
Protein coding
-Ensembl Canonical
MGP_CASTEiJ_T0044972.1-140201714aaMGP_CASTEiJ_P0044972
 
Protein coding
--
MGP_CASTEiJ_T0044973.1-6112621aaMGP_CASTEiJ_P0044973
 
Protein coding
--
MGP_CASTEiJ_T0044970.1-53931218aaMGP_CASTEiJ_P0044970
 
Protein coding
--
MGP_CASTEiJ_T0044974.1-53641213aaMGP_CASTEiJ_P0044974
 
Protein coding
--
MGP_CASTEiJ_T0044975.1-51471142aaMGP_CASTEiJ_P0044975
 
Protein coding
--
MGP_CASTEiJ_T0044969.1-38981176aaMGP_CASTEiJ_P0044969
 
Protein coding
CCDS37402, CCDS49913, CCDS49914D3Z6P4 E9Q0N0 E9Q3I4
E9Q3I5 E9Q3I8 E9Q3I9
F6R6C8 F6TCC6 F6U8U1
F6ZLP6 F6ZX53 Q6J1S9
Q6NZJ5 Q9Z0R4
-
MGP_CASTEiJ_T0044978.1-37871147aaMGP_CASTEiJ_P0044978
 
Protein coding
--
MGP_CASTEiJ_T0044979.1-1110359aaMGP_CASTEiJ_P0044979
 
Protein coding
--
MGP_CASTEiJ_T0044991.1-1036345aaMGP_CASTEiJ_P0044991
 
Protein coding
--
MGP_CASTEiJ_T0044987.1-821256aaMGP_CASTEiJ_P0044987
 
Protein coding
--
MGP_CASTEiJ_T0044993.1-519173aaMGP_CASTEiJ_P0044993
 
Protein coding
--
MGP_CASTEiJ_T0044986.1-99177aaMGP_CASTEiJ_P0044986
 
Nonsense mediated decay
--
MGP_CASTEiJ_T0044992.1-42265aaMGP_CASTEiJ_P0044992
 
Nonsense mediated decay
--
MGP_CASTEiJ_T0044988.1-28272aaMGP_CASTEiJ_P0044988
 
Nonsense mediated decay
--
MGP_CASTEiJ_T0044994.1-1059No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0044983.1-723No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0044990.1-568No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0044980.1-481No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0044981.1-442No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0044989.1-2804No protein-
 
Retained intron
--
MGP_CASTEiJ_T0044985.1-777No protein-
 
Retained intron
--
MGP_CASTEiJ_T0044984.1-492No protein-
 
Retained intron
--
MGP_CASTEiJ_T0044977.1-488No protein-
 
Retained intron
--
MGP_CASTEiJ_T0044982.1-355No protein-
 
Retained intron
--
MGP_CASTEiJ_T0044976.1-352No protein-
 
Retained intron
--
Statistics

Exons: 29, Coding exons: 27, Transcript length: 3,898 bps, Translation length: 1,176 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z0R4

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS37402, CCDS49913, CCDS49914

Version

MGP_CASTEiJ_T0044969.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.