Transcript: MGP_CASTEiJ_T0044067.1

Description

karyopherin (importin) alpha 1 [Source:MGI Symbol;Acc:MGI:103560]

Gene Synonyms

AW494490, IPOA5, NPI1, Rch2, importin alpha 5, m-importin-alpha-S1, mSRP1

Location

Chromosome 16: 34,173,629-34,234,050 forward strand.

Reference strain equivalent

Kpna1

About this transcript

This transcript has 13 exons, is annotated with 31 domains and features and maps to 396 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0022035.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0044067.1	-	4908	477aa	MGP_CASTEiJ_P0044067	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28144	G3UWJ8 G3UXF0 G3UXT6 G3UXW7 G3UYD2 G3UZK5 Q60960	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0044074.1	-	690	229aa	MGP_CASTEiJ_P0044074	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0044073.1	-	2961	45aa	MGP_CASTEiJ_P0044073	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0044072.1	-	1611	139aa	MGP_CASTEiJ_P0044072	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0044069.1	-	646	102aa	MGP_CASTEiJ_P0044069	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0044071.1	-	469	77aa	MGP_CASTEiJ_P0044071	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0044068.1	-	2535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0044075.1	-	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0044070.1	-	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 4,908 bps, Translation length: 477 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q60960

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS28144

Version

MGP_CASTEiJ_T0044067.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_CASTEiJ_T0044067.1

Summary

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Transcript: MGP_CASTEiJ_T0044067.1

Summary

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