Transcript: MGP_CASTEiJ_T0029401.1

Description

chromodomain helicase DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1344395]

Gene Synonyms

2600010P09Rik, AF020312, Chd7, Mi-2 alpha, Prp7, Prp9-1

Location

Chromosome 11: 69,406,270-69,432,246 reverse strand.

Reference strain equivalent

Chd3

About this transcript

This transcript has 40 exons, is annotated with 95 domains and features and maps to 339 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0017837.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0029401.1	-	7252	2055aa	MGP_CASTEiJ_P0029401	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48825	B0QZH7 B0QZH8 B1AR17 E9Q614 F6V4V3 F7C528	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0029404.1	-	6051	2016aa	MGP_CASTEiJ_P0029404	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0029405.1	-	5657	1885aa	MGP_CASTEiJ_P0029405	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0029408.1	-	591	196aa	MGP_CASTEiJ_P0029408	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0029409.1	-	453	151aa	MGP_CASTEiJ_P0029409	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0029410.1	-	430	143aa	MGP_CASTEiJ_P0029410	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0029402.1	-	2152	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0029403.1	-	1881	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0029406.1	-	747	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0029407.1	-	432	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 40, Coding exons: 40, Transcript length: 7,252 bps, Translation length: 2,055 residues

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS48825

Version

MGP_CASTEiJ_T0029401.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_CASTEiJ_T0029401.1

Summary

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Transcript: MGP_CASTEiJ_T0029401.1

Summary

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