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Transcript: MGP_CASTEiJ_T0021931.1

Description

Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]

Gene Synonyms

9430023P16Rik, Est1c, Kiaa0250, mKIAA0250

Location

Chromosome 1: 155,547,118-155,617,481 reverse strand.

Reference strain equivalent

Smg7

About this transcript

This transcript has 22 exons, is annotated with 23 domains and features and maps to 252 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0015938.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_CASTEiJ_T0021932.1-58171146aaMGP_CASTEiJ_P0021932
 
Protein coding
-Ensembl Canonical
MGP_CASTEiJ_T0021931.1-57921134aaMGP_CASTEiJ_P0021931
 
Protein coding
CCDS35740, CCDS48394, CCDS48395Q5RJH6 -
MGP_CASTEiJ_T0021933.1-39281138aaMGP_CASTEiJ_P0021933
 
Protein coding
--
MGP_CASTEiJ_T0021935.1-672No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0021934.1-574No protein-
 
Processed transcript
--
MGP_CASTEiJ_T0021936.1-524No protein-
 
Retained intron
--

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 5,792 bps, Translation length: 1,134 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RJH6

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS35740, CCDS48394, CCDS48395

Version

MGP_CASTEiJ_T0021931.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.