Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
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- Structural variants
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ID History
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Gene: Sdc3 MGP_CAROLIEiJ_G0026550

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Description

syndecan 3 [Source:MGI Symbol;Acc:MGI:1349163]

Location

Chromosome 4: 120,431,382-120,464,608 forward strand.

CAROLI_EIJ_v1.1:LT608246.1

About this gene

This gene has 5 transcripts (splice variants), 193 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
MGP_CAROLIEiJ_T0064758.1	Sdc3-201	4967	442aa	MGP_CAROLIEiJ_P0064758	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6P5PLF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0064761.1	Sdc3-204	658	148aa	MGP_CAROLIEiJ_P0064761	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
MGP_CAROLIEiJ_T0064760.1	Sdc3-203	644	148aa	MGP_CAROLIEiJ_P0064760	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
MGP_CAROLIEiJ_T0064762.1	Sdc3-205	1666	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
MGP_CAROLIEiJ_T0064759.1	Sdc3-202	495	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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