Transcript: MGP_C57BL6NJ_T0098340.1

Description

lysine (K)-specific demethylase 5C [Source:MGI Symbol;Acc:MGI:99781]

Gene Synonyms

D930009K15Rik, Jarid1c, Kiaa0234, Smcx, Xe169, mKIAA0234

Location

Chromosome X: 154,261,395-154,307,359 forward strand.

Reference strain equivalent

Kdm5c

About this transcript

This transcript has 26 exons, is annotated with 46 domains and features and maps to 447 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0036676.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0098340.1	-	5900	1554aa	MGP_C57BL6NJ_P0098340	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41178	F6WXI0 F7BXT3 P41230	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0098341.1	-	6444	1551aa	MGP_C57BL6NJ_P0098341	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0098343.1	-	5520	1510aa	MGP_C57BL6NJ_P0098343	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0098344.1	-	773	257aa	MGP_C57BL6NJ_P0098344	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0098345.1	-	756	176aa	MGP_C57BL6NJ_P0098345	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0098342.1	-	1872	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 5,900 bps, Translation length: 1,554 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41230

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS41178

Version

MGP_C57BL6NJ_T0098340.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0098340.1

Summary

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Transcript: MGP_C57BL6NJ_T0098340.1

Summary

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