Transcript: MGP_C57BL6NJ_T0085226.1

Description

Bloom syndrome, RecQ helicase-like [Source:MGI Symbol;Acc:MGI:1328362]

Location

Chromosome 7: 85,668,783-85,677,929 reverse strand.

Reference strain equivalent

Blm

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features and maps to 96 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0032899.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0085228.1	-	4770	1419aa	MGP_C57BL6NJ_P0085228	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0085227.1	-	4598	1416aa	MGP_C57BL6NJ_P0085227	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0085226.1	-	993	154aa	MGP_C57BL6NJ_P0085226	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40000, CCDS52281	A0A0U1RNI0 A0A0U1RPP0 A0A0U1RPS3 E9PZ97 O88700	-
MGP_C57BL6NJ_T0085232.1	-	465	50aa	MGP_C57BL6NJ_P0085232	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0085231.1	-	383	41aa	MGP_C57BL6NJ_P0085231	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0085229.1	-	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0085233.1	-	3581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0085234.1	-	2507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0085235.1	-	774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0085230.1	-	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 993 bps, Translation length: 154 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O88700

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS40000, CCDS52281

Version

MGP_C57BL6NJ_T0085226.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0085226.1

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: MGP_C57BL6NJ_T0085226.1

Summary

About Us

Get help

Our sister sites

Follow us