Transcript: MGP_C57BL6NJ_T0079548.1

Description

microphthalmia-associated transcription factor [Source:MGI Symbol;Acc:MGI:104554]

Gene Synonyms

BCC2, Bhlhe32, Gsfbcc2, Vitiligo, Wh, bHLHe32, bw, mi, vit, wh

Location

Chromosome 6: 102,196,940-102,417,902 forward strand.

Reference strain equivalent

Mitf

About this transcript

This transcript has 10 exons, is annotated with 25 domains and features and maps to 214 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0031517.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0079550.1	-	4881	526aa	MGP_C57BL6NJ_P0079550	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0079551.1	-	2144	510aa	MGP_C57BL6NJ_P0079551	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0079552.1	-	2144	501aa	MGP_C57BL6NJ_P0079552	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0079548.1	-	2113	520aa	MGP_C57BL6NJ_P0079548	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20385, CCDS51861, CCDS51862	A0A0N4SV79 A0A0N4SVJ5 D6RCW2 E9PZ28 E9QL92 Q08874 Q32MU7 Q3U2D2	-
MGP_C57BL6NJ_T0079553.1	-	1921	419aa	MGP_C57BL6NJ_P0079553	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0079555.1	-	1074	357aa	MGP_C57BL6NJ_P0079555	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0079554.1	-	1649	105aa	MGP_C57BL6NJ_P0079554	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0079549.1	-	1360	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,113 bps, Translation length: 520 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q08874

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS20385, CCDS51861, CCDS51862

Version

MGP_C57BL6NJ_T0079548.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0079548.1

Summary

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Transcript: MGP_C57BL6NJ_T0079548.1

Summary

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