Transcript: MGP_C57BL6NJ_T0063362.1

Description

protein tyrosine phosphatase, non-receptor type 22 (lymphoid) [Source:MGI Symbol;Acc:MGI:107170]

Gene Synonyms

70zpep, PEP, Ptpn8

Location

Chromosome 3: 109,047,025-109,104,047 forward strand.

Reference strain equivalent

Ptpn22

About this transcript

This transcript has 23 exons, is annotated with 2 domains and features and maps to 298 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0028118.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0063362.1	-	2757	715aa	MGP_C57BL6NJ_P0063362	Nonsense mediated decay	CCDS38577	E9QAS3 P29352	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0063364.1	-	737	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0063367.1	-	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0063366.1	-	2172	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0063365.1	-	1833	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0063369.1	-	649	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0063368.1	-	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0063363.1	-	2723	802aa	MGP_C57BL6NJ_P0063363	Unknown likely coding		-	-

Summary

Statistics

Exons: 23, Coding exons: 18, Transcript length: 2,757 bps, Translation length: 715 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P29352

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS38577

Version

MGP_C57BL6NJ_T0063362.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0063362.1

Summary

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Transcript: MGP_C57BL6NJ_T0063362.1

Summary

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