Ensembl mirror
More ▼
Search »
Mouse C57BL/6NJ (C57BL_6NJ_v1) ▼

Favourite species

All species

Recent locations

Transcript-based displays

Configure this page

Custom tracks

Export data

Bookmark this page

Transcript: MGP_C57BL6NJ_T0062721.1

Description

regulatory factor X, 5 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1858421]

Location

Chromosome 3: 99,203,455-99,208,940 forward strand.

Reference strain equivalent

Rfx5

About this transcript

This transcript has 11 exons, is annotated with 28 domains and features and maps to 154 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0027981.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_C57BL6NJ_T0062723.1-4333658aaMGP_C57BL6NJ_P0062723
 
Protein coding
-Ensembl Canonical
MGP_C57BL6NJ_T0062728.1-4450303aaMGP_C57BL6NJ_P0062728
 
Protein coding
--
MGP_C57BL6NJ_T0062731.1-4367303aaMGP_C57BL6NJ_P0062731
 
Protein coding
--
MGP_C57BL6NJ_T0062736.1-4189658aaMGP_C57BL6NJ_P0062736
 
Protein coding
--
MGP_C57BL6NJ_T0062721.1-2355658aaMGP_C57BL6NJ_P0062721
 
Protein coding
CCDS17598D3YTK4 D3YVW1 D3YZK7
D3Z0D4 D6RDE5 K4DI79
Q6DI69 Q9JL61 		-
MGP_C57BL6NJ_T0062735.1-2350658aaMGP_C57BL6NJ_P0062735
 
Protein coding
--
MGP_C57BL6NJ_T0062732.1-882181aaMGP_C57BL6NJ_P0062732
 
Protein coding
--
MGP_C57BL6NJ_T0062734.1-565105aaMGP_C57BL6NJ_P0062734
 
Protein coding
--
MGP_C57BL6NJ_T0062724.1-53890aaMGP_C57BL6NJ_P0062724
 
Protein coding
--
MGP_C57BL6NJ_T0062733.1-53695aaMGP_C57BL6NJ_P0062733
 
Protein coding
--
MGP_C57BL6NJ_T0062722.1-486131aaMGP_C57BL6NJ_P0062722
 
Protein coding
--
MGP_C57BL6NJ_T0062725.1-401441aaMGP_C57BL6NJ_P0062725
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0062727.1-70541aaMGP_C57BL6NJ_P0062727
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0062729.1-52541aaMGP_C57BL6NJ_P0062729
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0062726.1-346No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0062730.1-4139No protein-
 
Retained intron
--
MGP_C57BL6NJ_T0062737.1-680No protein-
 
Retained intron
--

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 2,355 bps, Translation length: 658 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JL61

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS17598

Version

MGP_C57BL6NJ_T0062721.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.