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Transcript: MGP_C57BL6NJ_T0055143.1

Description

methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]

Gene Synonyms

9430004D19Rik, AA536666, AI426407, C030040A15Rik, Gm1630, OTTMUSG00000012483

Location

Chromosome 2: 49,578,660-49,901,061 forward strand.

Reference strain equivalent

Mbd5

About this transcript

This transcript has 11 exons, is annotated with 20 domains and features and maps to 218 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0026138.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_C57BL6NJ_T0055151.1-85431728aaMGP_C57BL6NJ_P0055151
 
Protein coding
-Ensembl Canonical
MGP_C57BL6NJ_T0055143.1-6037856aaMGP_C57BL6NJ_P0055143
 
Protein coding
CCDS38122, CCDS71051A0A0G2JEL9 A0A0G2JF81 A0A0G2JFF3
A0A0G2JG39 B1AYB5 B1AYB6
B1AYB7 F6Q8U1 Q3TTF1
-
MGP_C57BL6NJ_T0055145.1-59781498aaMGP_C57BL6NJ_P0055145
 
Protein coding
--
MGP_C57BL6NJ_T0055153.1-37421066aaMGP_C57BL6NJ_P0055153
 
Protein coding
--
MGP_C57BL6NJ_T0055157.1-66076aaMGP_C57BL6NJ_P0055157
 
Protein coding
--
MGP_C57BL6NJ_T0055152.1-360119aaMGP_C57BL6NJ_P0055152
 
Protein coding
--
MGP_C57BL6NJ_T0055154.1-6197435aaMGP_C57BL6NJ_P0055154
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0055156.1-928113aaMGP_C57BL6NJ_P0055156
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0055155.1-785155aaMGP_C57BL6NJ_P0055155
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0055146.1-3401No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0055149.1-713No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0055144.1-621No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0055147.1-608No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0055148.1-501No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0055150.1-351No protein-
 
Processed transcript
--

Summary

Statistics

Exons: 11, Coding exons: 4, Transcript length: 6,037 bps, Translation length: 856 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: B1AYB6

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS38122, CCDS71051

Version

MGP_C57BL6NJ_T0055143.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.