Transcript: MGP_C57BL6NJ_T0052155.1

Description

PDZ and LIM domain 1 (elfin) [Source:MGI Symbol;Acc:MGI:1860611]

Gene Synonyms

CLP36, Clim1, mClim1

Location

Chromosome 19: 40,488,954-40,552,104 reverse strand.

Reference strain equivalent

Pdlim1

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features and maps to 276 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0025525.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0052155.1	-	2571	327aa	MGP_C57BL6NJ_P0052155	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37977	O70400 S4R1V0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0052158.1	-	692	198aa	MGP_C57BL6NJ_P0052158	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0052159.1	-	2819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0052156.1	-	715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0052157.1	-	666	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,571 bps, Translation length: 327 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O70400

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS37977

Version

MGP_C57BL6NJ_T0052155.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0052155.1

Summary

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Transcript: MGP_C57BL6NJ_T0052155.1

Summary

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